Modules

• CHECK_FOLDER Module
  • Folder Structure Requirements
  • Options
  • Example Usage
  • checkPatientFolderStructure()
  • checkPatientFolderStructure_Alternative()
  • main()
• REORGANIZE Module
  • Options
  • Example Usage
  • main()
  • reorganize()
• DCM2NII Module
  • Options
  • Example Usage
  • boolean_mask_to_3d_array()
  • convert_dicom_with_timeout()
  • main()
  • process_patient()
  • rtstruct_with_timeout()
• SPATIAL_RESAMPLING Module
  • Options
  • Example Usage
  • is_mask()
  • main()
  • process_patient()
  • resample_image_sitk()
• INTENSITY_RESAMPLING Module
  • Options
  • Example Usage
  • main()
  • ordinal_suffix()
  • resampling()
• MERGE_MASK Module
  • Options
  • Example Usage
  • main()
  • merge_volume()
• MASK_THRESHOLDING Module
  • Options
  • Example Usage
  • crop_volume()
  • main()
• I-WINDOWING Module
  • Predefined Windows
  • Options
  • Example Usage
  • main()
  • windowing()
  • windows_preset()
• I-HARMONIZE Module
  • Options
  • Example Usage
  • harmonize_image()
  • main()
• N4-BIAS-FIELD-CORRECTION Module
  • Options
  • Example Usage
  • correct_bias_field()
  • main()
• SEGMENTATION Module
  • Options
  • Example Usage
  • add_prefix()
  • image_segmentation()
  • main()
  • remove_finished_jobs()
• RADIOMICS Module
  • Options
  • Example Usage
  • deleteTmp_xlsx()
  • extract_radiomics()
  • gaborFilterImg()
  • main()
  • merge_xlsx()
  • parse()
  • radiomics_statistics()
  • read_config_file()
• F-NORMALIZE Module
  • Options
  • Example Usage
  • main()
  • perform_normalization()
• F-HARMONIZE Module
  • Modes of Harmonization
  • Options
  • Batch File Structure
  • Example Usage
  • main()
• PREDICT Module
  • main()
• COPY Module
  • main()
• DELETE Module
  • delete_folder()
  • main()